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1

Proteome analysis of non-model plants: A challenging but powerful approach

Sebastien Christian Carpentier, Bart Panis, Annelies Vertommen, Rony Swennen, Kjell Sergeant, Jenny Renaut, Kris Laukens, Erwin Witters, Bart Samyn, Bart Devreese

Journal:

Mass Spectrometry Reviews

Year:

2008

Language:

english

File:

PDF, 528 KB

english, 2008

2

In Vitro Asymbiotic Germination, Protocorm Development, and Plantlet Acclimatization of Aplectrum Hyemale (Muhl. ex Willd.) Torr. (Orchidaceae)

Lauzer, Denis, Renaut, Sébastien, St-Arnaud, Marc, Barabé, Denis

Journal:

Journal of the Torrey Botanical Society

Year:

2007

Language:

english

File:

PDF, 414 KB

english, 2007

3

Plant Community and Nitrogen Deposition as Drivers of Alpha and Beta Diversities of Prokaryotes in Reconstructed Oil Sand Soils and Natural Boreal Forest Soils

Masse, Jacynthe, Prescott, Cindy E., Renaut, Sébastien, Terrat, Yves, Grayston, Sue J., Voordouw, Gerrit

Journal:

Applied and Environmental Microbiology

Year:

2017

Language:

english

File:

PDF, 2.51 MB

english, 2017

4

Genome sequencing: Illuminating the sunflower genome

Renaut, Sébastien

Journal:

Year:

2017

Language:

english

File:

PDF, 207 KB

english, 2017

5

Proteomic Insights on the Metabolism of Penicillium janczewskii during the Biotransformation of the Plant Terpenoid Labdanolic Acid

Martins, Isabel, Varela, Adélia, Frija, Luís M. T., Estevão, Mónica A. S., Planchon, Sébastien, Renaut, Jenny, Afonso, Carlos A. M., Silva Pereira, Cristina

Journal:

Frontiers in Bioengineering and Biotechnology

Year:

2017

Language:

english

File:

PDF, 1.23 MB

english, 2017

6

Alteration of plasma membrane-bound redox systems of iron deficient pea roots by chitosan

Claudia-Nicole Meisrimler, Sebastien Planchon, Jenny Renaut, Kjell Sergeant, Sabine Lüthje

Journal:

Journal of Proteomics

Year:

2011

Language:

english

File:

PDF, 838 KB

english, 2011

7

Poplar under drought: Comparison of leaf and cambial proteomic responses

Thomas C. Durand, Kjell Sergeant, Jenny Renaut, Sébastien Planchon, Lucien Hoffmann, Sabine Carpin, Philippe Label, Domenico Morabito, Jean Francois Hausman

Journal:

Journal of Proteomics

Year:

2011

Language:

english

File:

PDF, 848 KB

english, 2011

8

A DIGE analysis of developing poplar leaves subjected to ozone reveals major changes in carbon metabolism

Sacha Bohler, Matthieu Bagard, Mouhssin Oufir, Sébastien Planchon, Lucien Hoffmann, Yves Jolivet, Jean-François Hausman, Pierre Dizengremel, Jenny Renaut

Journal:

Year:

2007

Language:

english

File:

PDF, 716 KB

english, 2007

9

Proteomic evaluation of wound-healing processes in potato (Solanum tuberosum L.) tuber tissue

Inês Chaves, Carla Pinheiro, Jorge A. P. Paiva, Sébastien Planchon, Kjell Sergeant, Jenny Renaut, José A. Graça, Gonçalo Costa, Ana V. Coelho, Cândido P. Pinto Ricardo

Journal:

Year:

2009

Language:

english

File:

PDF, 2.78 MB

english, 2009

10

Acute metal stress in Populus tremula×P. alba (717-1B4 genotype): Leaf and cambial proteome changes induced by cadmium2+

Thomas C. Durand, Kjell Sergeant, Sébastien Planchon, Sabine Carpin, Philippe Label, Domenico Morabito, Jean-François Hausman, Jenny Renaut

Journal:

Year:

2010

Language:

english

File:

PDF, 380 KB

english, 2010

11

Analysis of proteome and frost tolerance in chromosome 5A and 5B reciprocal substitution lines between two winter wheats during long-term cold acclimation

Pavel Vítámvás, Ilja T. Prášil, Klára Kosová, Sébastien Planchon, Jenny Renaut

Journal:

Year:

2012

Language:

english

File:

PDF, 666 KB

english, 2012

12

The use of 2D-electrophoresis and de novo sequencing to characterize inter- and intra-cultivar protein polymorphisms in an allopolyploid crop

Sebastien Christian Carpentier, Bart Panis, Jenny Renaut, Bart Samyn, Annelies Vertommen, Anne-Catherine Vanhove, Rony Swennen, Kjell Sergeant

Journal:

Year:

2011

Language:

english

File:

PDF, 1.09 MB

english, 2011

13

THE ECOLOGY AND GENETICS OF FITNESS IN CHLAMYDOMONAS. XIII. FITNESS OF LONG-TERM SEXUAL AND ASEXUAL POPULATIONS IN BENIGN ENVIRONMENTS

Sébastien Renaut, Taissa Replansky, Audrey Heppleston, Graham Bell

Journal:

Year:

2006

Language:

english

File:

PDF, 116 KB

english, 2006

14

Mining transcriptome sequences towards identifying adaptive single nucleotide polymorphisms in lake whitefish species pairs (Coregonus spp. Salmonidae)

SÉBASTIEN RENAUT, ARNE W. NOLTE, LOUIS BERNATCHEZ

Journal:

Molecular Ecology

Year:

2010

Language:

english

File:

PDF, 360 KB

english, 2010

15

The transcriptomics of sympatric dwarf and normal lake whitefish (Coregonus clupeaformis spp., Salmonidae) divergence as revealed by next-generation sequencing

JULIE JEUKENS, SÉBASTIEN RENAUT, JÉRÔME ST-CYR, ARNE W. NOLTE, LOUIS BERNATCHEZ

Journal:

Molecular Ecology

Year:

2010

Language:

english

File:

PDF, 351 KB

english, 2010

16

Contemporary hybrid speciation in sculpins (Cottus spp.)

SÉBASTIEN RENAUT

Journal:

Molecular Ecology

Year:

2011

Language:

english

File:

PDF, 184 KB

english, 2011

17

SNP signatures of selection on standing genetic variation and their association with adaptive phenotypes along gradients of ecological speciation in lake whitefish species pairs (Coregonus spp.)

SÉBASTIEN RENAUT, ARNE W. NOLTE, SEAN M. ROGERS, NICOLAS DEROME, LOUIS BERNATCHEZ

Journal:

Molecular Ecology

Year:

2011

Language:

english

File:

PDF, 612 KB

english, 2011

18

Proteomic analysis of plasma samples from patients with acute myocardial infarction identifies haptoglobin as a potential prognostic biomarker

Benjamin Haas, Tommaso Serchi, Daniel R. Wagner, Georges Gilson, Sebastien Planchon, Jenny Renaut, Lucien Hoffmann, Torsten Bohn, Yvan Devaux

Journal:

Journal of Proteomics

Year:

2011

Language:

english

File:

PDF, 605 KB

english, 2011

19

Divergence in gene regulation at young life history stages of whitefish (Coregonussp.) and the emergence of genomic isolation

Arne W Nolte, Sébastien Renaut, Louis Bernatchez

Journal:

BMC Evolutionary Biology

Year:

2009

Language:

english

File:

PDF, 290 KB

english, 2009

20

Atrazine and PCB 153 and their effects on the proteome of subcellular fractions of human MCF-7 cells

Jean-Paul Lasserre, Fred Fack, Tommaso Serchi, Dominique Revets, Sébastien Planchon, Jenny Renaut, Lucien Hoffmann, Arno C. Gutleb, Claude P. Muller, Torsten Bohn

Journal:

Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics

Year:

2012

Language:

english

File:

PDF, 802 KB

english, 2012

21

Characterization of maize allergens — MON810 vs. its non-transgenic counterpart

Cátia Fonseca, Sébastien Planchon, Jenny Renaut, Maria Margarida Oliveira, Rita Batista

Journal:

Journal of Proteomics

Year:

2012

Language:

english

File:

PDF, 1.04 MB

english, 2012

22

Recommendations for utilizing and reporting population genetic analyses: the reproducibility of genetic clustering using the program structure

Kimberly J. Gilbert, Rose L. Andrew, Dan G. Bock, Michelle T. Franklin, Nolan C. Kane, Jean-Sébastien Moore, Brook T. Moyers, Sébastien Renaut, Diana J. Rennison, Thor Veen, Timothy H. Vines

Journal:

Molecular Ecology

Year:

2012

Language:

english

File:

PDF, 186 KB

english, 2012

23

Targeted sequence capture and resequencing implies a predominant role of regulatory regions in the divergence of a sympatric lake whitefish species pair ( Coregonus clupeaformis )

Hebert, Francois Olivier, Renaut, Sébastien, Bernatchez, Louis

Journal:

Molecular Ecology

Year:

2013

Language:

english

File:

PDF, 482 KB

english, 2013

24

Proteome Analysis of Cold Response in Spring and Winter Wheat ( Triticum aestivum ) Crowns Reveals Similarities in Stress Adaptation and Differences in Regulatory Processes between the Growth Habits

Kosová, Klára, Vítámvás, Pavel, Planchon, Sébastien, Renaut, Jenny, Vanková, Radomíra, Prášil, Ilja Tom

Journal:

Journal of Proteome Research

Year:

2013

Language:

english

File:

PDF, 3.40 MB

english, 2013

25

The Availability of Research Data Declines Rapidly with Article Age

Vines, Timothy H., Albert, Arianne Y.K., Andrew, Rose L., Débarre, Florence, Bock, Dan G., Franklin, Michelle T., Gilbert, Kimberly J., Moore, Jean-Sébastien, Renaut, Sébastien, Rennison, Diana J.

Journal:

Current Biology

Year:

2014

Language:

english

File:

PDF, 441 KB

english, 2014

26

Investigating Aspergillus nidulans secretome during colonisation of cork cell walls

Martins, Isabel, Garcia, Helga, Varela, Adélia, Núñez, Oscar, Planchon, Sébastien, Galceran, Maria Teresa, Renaut, Jenny, Rebelo, Luís P.N., Silva Pereira, Cristina

Journal:

Journal of Proteomics

Year:

2014

Language:

english

File:

PDF, 1.97 MB

english, 2014

27

Differential cadmium and zinc distribution in relation to their physiological impact in the leaves of the accumulating Zygophyllum fabago L.

LEFÈVRE, ISABELLE, VOGEL-MIKUŠ, KATARINA, JEROMEL, LUKA, VAVPETIČ, PRIMOŽ, PLANCHON, SÉBASTIEN, ARČON, IZTOK, ELTEREN, JOHANNES T VAN, LEPOINT, GILLES, GOBERT, SYLVIE, RENAUT, JENNY, PELICON, PRIMOŽ,

Journal:

Plant, Cell & Environment

Year:

2014

Language:

english

File:

PDF, 1.99 MB

english, 2014

28

Advances in Ecological Speciation: an integrative approach

Faria, Rui, Renaut, Sebastien, Galindo, Juan, Pinho, Catarina, Melo-Ferreira, José, Melo, Martim, Jones, Felicity, Salzburger, Walter, Schluter, Dolph, Butlin, Roger

Journal:

Molecular Ecology

Year:

2014

Language:

english

File:

PDF, 580 KB

english, 2014

29

Physiological and proteomic changes suggest an important role of cell walls in the high tolerance to metals of Elodea nuttallii

Larras, Floriane, Regier, Nicole, Planchon, Sébastien, Poté, John, Renaut, Jenny, Cosio, Claudia

Journal:

Journal of Hazardous Materials

Year:

2013

Language:

english

File:

PDF, 1.50 MB

english, 2013

30

Proteomic alterations induced by ionic liquids in Aspergillus nidulans and Neurospora crassa

Martins, Isabel, Hartmann, Diego O., Alves, Paula C., Planchon, Sébastien, Renaut, Jenny, Leitão, M. Cristina, Rebelo, Luís P.N., Silva Pereira, Cristina

Journal:

Journal of Proteomics

Year:

2013

Language:

english

File:

PDF, 1.41 MB

english, 2013

31

Maize IgE binding proteins: each plant a different profile?

Fonseca, Cátia, Planchon, Sébastien, Pinheiro, Carla, Renaut, Jenny, Ricardo, Cândido, Oliveira, M, Batista, Rita

Journal:

Proteome Science

Year:

2014

Language:

english

File:

PDF, 1.28 MB

english, 2014

32

Identification of Differentially Expressed Proteins in Curcumin-Treated Prostate Cancer Cell Lines

Teiten, Marie-Hélène, Gaigneaux, Anthoula, Chateauvieux, Sébastien, Billing, Anja M., Planchon, Sébastien, Fack, Fred, Renaut, Jenny, Mack, Fabienne, Muller, Claude P., Dicato, Mario, Diederich, Marc

Journal:

Omics A Journal of Integrative Biology

Year:

2012

Language:

english

File:

PDF, 582 KB

english, 2012

33

In vitro models as physiologically relevant tools to investigate pulmonary and intestinal toxicity

Klein, Sebastian G., Georgantzopoulou, Anastasia, Serchi, Tommaso, Cambier, Sebastien, Leclercq, Celine C., Renaut, Jenny, Kruszewski, Marcin, Lankoff, Anna, Lentzen, Esther, Grysan, Patrick, Audinot,

Journal:

Toxicology Letters

Year:

2014

Language:

english

File:

PDF, 91 KB

english, 2014

34

Genomic Resources Notes accepted 1 February 2013-31 March 2013

King, Matthew G., Renaut, Sébastien, Rieseberg, Loren H., Rowe, Heather C.

Journal:

Molecular Ecology Resources

Year:

2013

Language:

english

File:

PDF, 77 KB

english, 2013

35

Shared selective pressure and local genomic landscape lead to repeatable patterns of genomic divergence in sunflowers

Renaut, Sebastien, Owens, Gregory L., Rieseberg, Loren H.

Journal:

Molecular Ecology

Year:

2014

Language:

english

File:

PDF, 1.17 MB

english, 2014

36

The old 3-oxoadipate pathway revisited: New insights in the catabolism of aromatics in the saprophytic fungus Aspergillus nidulans

Martins, Tiago M., Hartmann, Diego O., Planchon, Sébastien, Martins, Isabel, Renaut, Jenny, Silva Pereira, Cristina

Journal:

Fungal Genetics and Biology

Year:

2015

Language:

english

File:

PDF, 2.52 MB

english, 2015

37

Lettuce (Lactuca sativa L.) leaf-proteome profiles after exposure to cylindrospermopsin and a microcystin-LR/cylindrospermopsin mixture: A concentration-dependent response

Freitas, Marisa, Campos, Alexandre, Azevedo, Joana, Barreiro, Aldo, Planchon, Sébastien, Renaut, Jenny, Vasconcelos, Vitor

Journal:

Year:

2015

Language:

english

File:

PDF, 1.17 MB

english, 2015

38

In vitro culture may be the major contributing factor for transgenic versus nontransgenic proteomic plant differences

Fonseca, Cátia, Planchon, Sébastien, Serra, Tânia, Chander, Subhash, Saibo, Nelson J. M., Renaut, Jenny, Oliveira, M. Margarida, Batista, Rita

Journal:

Year:

2015

Language:

english

File:

PDF, 1.11 MB

english, 2015

39

Corrigendum

Gilbert, Kimberly J., Andrew, Rose L., Bock, Dan G., Franklin, Michelle T., Kane, Nolan C., Moore, Jean-Sébastien, Moyers, Brook T., Renaut, Sébastien, Rennison, Diana J., Veen, Thor, Vines, Timothy H

Journal:

Molecular Ecology

Year:

2013

Language:

english

File:

PDF, 79 KB

english, 2013

40

A new approach to quantify the adaptive potential of gene expression variation in gymnosperms

Renaut, Sébastien

Journal:

Molecular Ecology

Year:

2013

Language:

english

File:

PDF, 210 KB

english, 2013

41

The Ecology and Genetics of Fitness in Chlamydomonas. XIII. Fitness of Long-Term Sexual and Asexual Populations in Benign Environments

Sébastien Renaut , Taissa Replansky, Audrey Heppleston and Graham Bell

Journal:

Year:

2006

Language:

english

File:

PDF, 1.17 MB

english, 2006

42

In vitro Asymbiotic Germination, Protocorm Development, and Plantlet Acclimatization of Aplectrum hyemale (Muhl. Ex Willd.) Torr. (Orchidaceae)

Denis Lauzer, Sébastien Renaut, Marc St-Arnaud and Denis Barabé

Journal:

Journal of the Torrey Botanical Society

Year:

2007

Language:

english

File:

PDF, 1.12 MB

english, 2007

43

Genetic structure and within-generation genome scan analysis of fisheries-induced evolution in a Lake Whitefish (Coregonus clupeaformis) population

Chebib, Jobran, Renaut, Sébastien, Bernatchez, Louis, Rogers, Sean M.

Journal:

Conservation Genetics

Year:

2016

Language:

english

File:

PDF, 535 KB

english, 2016

44

Front cover: Stuck at work? Quantitative proteomics of environmental wine yeast strains reveals the natural mechanism of overcoming stuck fermentation

Szopinska, Aleksandra, Christ, Eva, Planchon, Sebastien, König, Helmut, Evers, Daniele, Renaut, Jenny

Journal:

Year:

2016

File:

PDF, 629 KB

2016

45

2-D DIGE proteomic profiles of three strains of Fusarium graminearum grown in agmatine or glutamic acid medium

Serchi, Tommaso, Pasquali, Matias, Leclercq, Céline C., Planchon, Sébastien, Hoffmann, Lucien, Renaut, Jenny

Journal:

Year:

2016

Language:

english

File:

PDF, 349 KB

english, 2016

46

Effects of silver nanoparticles and ions on a co-culture model for the gastrointestinal epithelium

Georgantzopoulou, Anastasia, Serchi, Tommaso, Cambier, Sébastien, Leclercq, Céline C., Renaut, Jenny, Shao, Jia, Kruszewski, Marcin, Lentzen, Esther, Grysan, Patrick, Eswara, Santhana, Audinot, Jean-N

Journal:

Particle and Fibre Toxicology

Year:

2015

Language:

english

File:

PDF, 1.82 MB

english, 2015

47

INPPO2014, First INPPO World Congress on “Plant Proteomics: Methodology to Biology”-A global platform for involving, gathering and disseminating knowledge

Lüthje, Sabine, Renaut, Jenny, Job, Dominique, Hajduch, Martin, Carpentier, Sébastien, Sarkar, Abhijit, Agrawal, Raj, Dunn, Michael J., Rakwal, Randeep, Agrawal, Ganesh Kumar

Journal:

Year:

2015

Language:

english

File:

PDF, 617 KB

english, 2015

48

Origin of Species: 150 years later || On the origin of species: insights from the ecological genomics of lake whitefish

Louis Bernatchez, Sébastien Renaut, Andrew R. Whiteley, Nicolas Derome, Julie Jeukens, Lysandre Landry, Guoqing Lu, Arne W. Nolte, Kjartan Østbye, Sean M. Rogers and Jérôme St-Cyr

Journal:

Philosophical Transactions Biological Sciences

Year:

2010

Language:

english

File:

PDF, 3.92 MB

english, 2010

49

History repeats itself: genomic divergence in copepods

Renaut, Sébastien, Dion-Côté, Anne-Marie

Journal:

Molecular Ecology

Year:

2016

Language:

english

File:

PDF, 318 KB

english, 2016

50

Stuck at work? Quantitative proteomics of environmental wine yeast strains reveals the natural mechanism of overcoming stuck fermentation

Szopinska, Aleksandra, Christ, Eva, Planchon, Sebastien, König, Helmut, Evers, Daniele, Renaut, Jenny

Journal:

Year:

2016

Language:

english

File:

PDF, 2.24 MB

english, 2016